{"id":51,"date":"2019-05-08T20:33:38","date_gmt":"2019-05-08T20:33:38","guid":{"rendered":"https:\/\/wordpress.clarku.edu\/shuo\/?page_id=51"},"modified":"2019-05-10T16:10:09","modified_gmt":"2019-05-10T16:10:09","slug":"software","status":"publish","type":"page","link":"https:\/\/wordpress.clarku.edu\/shuo\/software\/","title":{"rendered":"Software"},"content":{"rendered":"<p>The implementation of Dijkstra\u2019s algorithm in MaxFlux-PRM is available to download for academic use only. Any request should be sent directly to the PI (Prof. Huo,&nbsp;<a href=\"mailto:shuo@clarku.edu\">shuo@clarku.edu<\/a>). Appropriate acknowledgement to the author(s) of the program in any scientific publications based in part on the program is required.<\/p>\n<p><strong>Citations:<\/strong><\/p>\n<p>1. D. Li, H. Yang, L. Han, S. Huo. &#8220;Predicting the folding pathway of engrailed homeodomain with a probabilistic roadmap enhanced reaction-path algorithm&#8221;.&nbsp;<em><strong>Biophys. J.&nbsp;<\/strong><\/em>94, 1622-1629 (2008).&nbsp;<\/p>\n<p>2. H. Yang, H. Wu, D. Li, L. Han, S. Huo. &#8220;Temperature-Dependent probabilistic roadmap: algorithm for calculating variationally optimized conformational transition pathways&#8221;.&nbsp;<strong><em>J. Chem. Theory Comput.<\/em><\/strong>&nbsp;3: 17-25 (2007).<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The implementation of Dijkstra\u2019s algorithm in MaxFlux-PRM is available to download for academic use only. Any request should be sent directly to the PI (Prof. Huo,&nbsp;shuo@clarku.edu). Appropriate acknowledgement to the [&hellip;]<\/p>\n","protected":false},"author":894,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-51","page","type-page","status-publish","czr-hentry"],"_links":{"self":[{"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/pages\/51","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/users\/894"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/comments?post=51"}],"version-history":[{"count":0,"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/pages\/51\/revisions"}],"wp:attachment":[{"href":"https:\/\/wordpress.clarku.edu\/shuo\/wp-json\/wp\/v2\/media?parent=51"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}